Cis-meQTLs across different cancer types

In cis-meQTL analysis, we identified 8,028,964 cis-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

 

e.g., "BLCA"
e.g., "rs11047888"
e.g., "cg25763538"
e.g., "KRAS"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
P-valule
Display
BLCA rs1186 chr1:227177731 A/T cg10327440 chr1:227177885 CDC42BPA -1.15 -32.58 -0.86 4.75E-112 Box Plot
BLCA rs12232965 chr2:33954560 C/T cg04131969 chr2:33951647 MYADML -1.24 -39.59 -0.9 6.71E-137 Box Plot
BLCA rs12403236 chr1:227196502 C/G cg10327440 chr1:227177885 CDC42BPA -1.13 -31.72 -0.85 8.02E-109 Box Plot
BLCA rs12409230 chr1:227187007 G/A cg10327440 chr1:227177885 CDC42BPA -1.14 -31.72 -0.85 7.63E-109 Box Plot
BLCA rs12409428 chr1:227189969 T/C cg10327440 chr1:227177885 CDC42BPA -1.14 -31.33 -0.85 2.27E-107 Box Plot
BLCA rs12409755 chr1:227196949 A/T cg10327440 chr1:227177885 CDC42BPA -1.14 -31.78 -0.85 4.79E-109 Box Plot
BLCA rs12410103 chr1:227197408 T/C cg10327440 chr1:227177885 CDC42BPA -1.14 -31.78 -0.85 4.79E-109 Box Plot
BLCA rs12431034 chr13:100150958 T/G cg25919922 chr13:100150906 NA 1.16 32.58 0.86 4.61E-112 Box Plot
BLCA rs1252639 chr2:30739241 G/C cg12454169 chr2:30669597 LCLAT1 1.26 31.64 0.85 1.63E-108 Box Plot
BLCA rs1252641 chr2:30739530 T/C cg12454169 chr2:30669597 LCLAT1 1.26 31.64 0.85 1.63E-108 Box Plot
BLCA rs1252643 chr2:30739772 A/G cg12454169 chr2:30669597 LCLAT1 1.26 31.64 0.85 1.63E-108 Box Plot
BLCA rs1252647 chr2:30742514 G/A cg12454169 chr2:30669597 LCLAT1 1.26 31.64 0.85 1.63E-108 Box Plot
BLCA rs12621007 chr2:99791946 G/C cg15544633 chr2:99771531 LIPT1;TSGA10 1.17 32.64 0.86 2.84E-112 Box Plot
BLCA rs13010904 chr2:99754289 G/A cg15544633 chr2:99771531 LIPT1;TSGA10 1.18 33.57 0.86 1.0E-115 Box Plot
BLCA rs13012481 chr2:99754290 C/A cg15544633 chr2:99771531 LIPT1;TSGA10 1.18 33.57 0.86 1.0E-115 Box Plot